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Position: Software Developer for Computational Biology/Chemistry Platform
Institution: Technical University of Denmark
Department: Center for Biosustainability
Location: Kongens Lyngby, Lyngby‐Taarbæk Municipality, Denmark
Duties: As a software developer, you will be contributing to the next generation metabolic modeling software. Your responsibilities will relate mostly to the backend side. Your main tasks would include: Developing new features and interfaces while maintaining clean and coherent codebase. Collaborating with the project partners outside of the team if needed. Participating in regular meetings where the team members altogether discuss the progress and the next steps
Requirements: A degree in Computer Science, Bioinformatics, Data Science or a related field, or equivalent work experience. Git version control. Would be a plus to have experience with: Working with graph databases (neo4j). Chemoinformatics packages (rdkit, chemaxon). Systems Biology packages (cameo, cobrapy). DevOps. Scientific Python stack (numpy, scipy, pandas etc). Docker and orchestration tools (Kubernetes etc). Agile development (Scrum etc). You are also expected to be able to work in a highly collaborative environment, inside the team as well as with the other project partners. Thus, fluent written and spoken English is essential
   
Text: Software Developer for Computational Biology/Chemistry Platform Center for Biosustainability Del til Facebook Del til Twitter Del til LinkedIn Tuesday 20 Nov 18 Apply for this job Apply no later than 1 January 2019 Apply for the job at Center for Biosustainability by completing the following form. Apply online Life styles in our societies are set and defined by our living standards, which are being fulfilled by specific consumption patterns. If we expect to continue growing globally, without irreversibly affecting our environment, new sustainable technologies and processes must be developed. The Novo Nordisk Foundation Center for Biosustainability (CFB) was founded on the vision “to lead the transformation of chemical production from a petrochemical industry to a more sustainable bio-based industry”. In order to fulfil this expectation, the CFB is developing technologies which aims to rapidly construct microbial cell factories (MFC) to produce a range of chemical products The project The computational chemistry group, at the Novo Nordisk Foundation Center for Biosustainability aims to provide metabolic engineers a comprehensive set of computer aided designs and the corresponding analysis, for accelerating the microbial cell factory development process. By integrating state of the art systems biology and chemoinformatic computational tools and methods, our goal is to elucidate the theoretical capabilities of a cell to become a microbial cell factory for bio-manufacture any chemical compound of interest. The biological designs include a rank order set of biological pathways with the corresponding genome-protein-associations, together with a heterologous pathway host’s insertion risks analysis, and eventually a structured plasmid design to express the necessary genes in the predefined host. The job We are looking for a software developer with a strong focus on scientific tools implementations and integration. You will be dealing with biological and chemical concepts every day, and figuring it out efficient ways to operate with genes and biochemical reactions. Deep understanding of biology and chemistry is not a requirement, nevertheless we expect you to engage and embrace concepts related to sustainability, microbial cell factories and metabolic engineering, As a software developer, you will be contributing to the next generation metabolic modeling software. Your responsibilities will relate mostly to the backend side. Your main tasks would include: Developing new features and interfaces while maintaining clean and coherent codebase Collaborating with the project partners outside of the team if needed Participating in regular meetings where the team members altogether discuss the progress and the next steps Our expectations of you The competences that will be required: A degree in Computer Science, Bioinformatics, Data Science or a related field, or equivalent work experience Git version control Would be a plus to have experience with: Working with graph databases (neo4j) Chemoinformatics packages (rdkit, chemaxon) Systems Biology packages (cameo, cobrapy) DevOps Scientific Python stack (numpy, scipy, pandas etc) Docker and orchestration tools (Kubernetes etc) Agile development (Scrum etc) You are also expected to be able to work in a highly collaborative environment, inside the team as well as with the other project partners. Thus, fluent written and spoken English is essential. What we offer in return We offer an interesting and challenging job in an international atmosphere with the focus on research, teaching, innovation and scientific advice for the benefit of the surrounding community. We place emphasis on a high level of professionalism among our staff, so skills development is an integral part of our organization. We offer a great flexibility in the position. In the area of technical and natural sciences, DTU is one of the leading research and education institutions in Europe. Furthermore, we offer: A meaningful project mission of making a step towards green sustainable economy A multidisciplinary team of software engineers and computational biologists A budget for self-development activities, courses and conferences. We believe that learning is crucial for success and motivation Horizontal team structure where everybody has a voice and can make impactful decisions Social life; the institute is located on the campus of the Technical University of Denmark and has an in-house gym, a library, a brewing club and much more. Salary and appointment terms The appointment will be based on the collective agreement with the Confederation of Professional Associations. The allowance will be agreed with the relevant union. The position is limited until February 28, 2020. The working place will be at DTU Lyngby Campus. Application and contact Please submit your online application no later than 1 January 2019. Open the “Apply online” link, fill out the form and attach your motivated application, CV and exam certificates. If you would like additional information about the position, please contact Researcher, Miguel Campodonico (migana@biosustain.dtu.dk). All interested candidates irrespective of age, gender, race, disability, religion or ethnic background are encouraged to apply. DTU Biosustain is an international research center of excellence developing next generation cell factories and bioprocesses for sustainable production of high-value chemical compounds as well as protein-based products. The center uses advanced metabolic engineering techniques and computational biology ensuring efficient and cost-effective design and construction processes. The center’s activities are a balanced mix of basic and translational research, complemented by an emphasis on business development to facilitate commercialization of new cell factories and associated technologies. DTU Biosustain offers state-of-the-art research facilities and assembles world leaders in the field thus, offering a unique platform providing excellent talent development and career opportunities. DTU is a technical university providing internationally leading research, education, inn ovation and scientific advice . Our staff of 6,000 advance science and technology to create innovative solutions that meet the demands of society, and our 11,200 students are being educated to address the technological challenges of the future. DTU is an independent academic university collaborating globally with business, industry, government and public agencies.
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